See full list of publications (2008-2024) here.

Archibald, J.M. (2024) Symbiotic revolutions at the interface of genomics and microbiology. PLoS Biol. 22: e3002581.

Bach, L.T., Ferderer, A.J., LaRoche, J., Schulz, K.G. (2024) Ocean alkalinity enhancement pelagic impact intercomparison project (OAEPIIP).  EGlUsphere: 1-22.

Baker, B.A., Gutiérrez-Preciado, A., Rodriguez del Rio, A., McCarthy, C.G.P, López-Garcia, P., Huerta-Cepas, J., Susko, E., Roger, A.J., Eme, L., Moreira, D. (2024) Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments. Nature Microbiol. 9: 964-975.

Bannon, C.C., Mudge, E.M., Bertrand, E.M. (2024) Shedding light on cobalamin photodegradation in the ocean.  Limnol. Oceanogr. Lett. 9: 135-144.

Baños, H., Susko, E., Roger, A.J. (2024) Is over-parameterization a problem for Profile Mixture Models? Syst. Biol. 73: 53-75.

Barra, J., Taverna, F., Bong, F., Ahmed, I., Karakach, T.K. (2024) Error modelled gene expression analysis (EMOGEA) provides a superior overview of time course RNA-Seq measurements and low count gene expression. Briefings Bioinfor. 25: bbae233.

Bittner, M.J., Bannon, C., Rowland, E., Sundh, J., Bertrand, E.M., Andersson, A.F., Paerl, R.W., Riemann, L. (2024) New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system.  ISME Commun. 4:  ycad016.

Bougon, J., Kadijk, E., Gallot-Lavallee, L., Curtis, B., Landers, M., Archibald, J.M., Khaperskyy, D.A. (2024) Influenza A virus NS1 effector domain is required for PA-X mediated host shutoff in infected cells. J. Virol. 98: e0190123.

Brisaboa, N., Gagie, T., Gomez-Brandon, A., Navarro, G. (2024) Two-dimensional block trees. The Computer J. 67: 391-406.

Cayer, L.G.J., Surendran, A., Karakach, T., Aukema, H.M., Ravandi, A. (2024) Valvular prostaglandins are elevated in severe human aortic valve stenosis. Arterioscler. Thromb. Vasc. Biol. 44: e131-144.

Chang, Y.Y., Valenzuela, C., Lensen, A., Lopez-Montero, N., Sidik, S., Salogiannis, J., Enninga, J., Rohde, J. (2024) Microtubules provide force to promote membrane uncoating in vacuolar escape for a cyto-invasive bacterial pathogen. Nat Commun. 15(1): 1065.

Collienne, L., Whidden, C., Gavryushkin, A. (2024) Ranked subtree prune and regraft. Bull. Math Biol. 86: 24.

Davoudi, P., Do, D.N., Colombo, S., Rathgeber, B., Sargolzaei, M., Plastow, G., Wang, Z., Hu, G., Valipour, S., Miar, Y.(2024) Genome-wide association studies for economically important traits in mink using copy number variation. Scientific Rep. 14: 24.

DeClercq, V., Wright, R.J., Nearing, J.T., Langille, MGI (2024) Oral microbial signatures associated with age and frailty in Canadian adults. Sci. Rep. 14: 9685.

Deen, E., van Iersel, L., Janssen, R., Jones, M., Murakami, Y., Zeh, N. (2024) A near-linear kernel for bounded-state parsimony distance. J. Comput. Syst. Sci. 140: 103477.

Do, Q.H., Nguyen, B.T., Ho, LST (2024) A generalization bound of deep neural networks for dependent data.  Statistics & Probability Lett. 28: 110060.

Doolittle, W.F. (2024) Darwinizing Gaia: Natural Selection and Community Evolution.  MIT Press (in press).  [Book]

Dutkiewicz, S. et al. [incl. Z.V. Finkel, A.J. Irwin] (2024). Multiple biotic interactions establish phyto-plankton community structure across environmental gradients.  Limnol. Oceanogr. 69: 1086-1100.

Eglit, Y., Shiratori, T., Jerlström-Hultqvist, J., Williamson, K., Roger, A.J., Ishida, K.I., Simpson,   A.G.B. (2024) Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora. Curr. Biol. 34: 451–459.

Feng, X., et al. [incl. J.M. Archibald] (2024) Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature Genet. 56: 1018-1031.

Fisher, LAB, Carriquí-Madroñal, B., Mulder, T., Huelsmann, S., Schöck, F., González-Morales, N. (2024) Filamin protects myofibrils from contractile damage through changes in its mechanosensory region. PLoS Genet. 20: e1011101. 

Griffiths, E.J. et al. [incl. F. Maguire] (2024) PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training. Microb. Genomics 10: 1-12.  

Haider, D., Hall, M.W., LaRoche, J., Beiko, R.G. (2024) Mock microbial community meta-analysis using different trimming of amplicon read lengths. Env. Microbiol. 26: e16566.

Hong, A., Boucher, C., Gagie, T., Li, Y., and Zeh, N. (2024) Another virtue of wavelet forests. 2024 Data Compression Conference (DCC), Utah, pp. 559-559.

Hong, A., Oliva, M., Koppl, D., Bannai, H., Boucher, C. and Gagie, T. (2024) PFP-FM: an accelerated FM-index. Algorithms for Mol. Biol. 19: 15.

Hu, Y-Y., Irwin, A.J., Finkel, Z.V. (2024) An improved method to quantify bulk carbohydrate in marine planktonic samples.  Limnol. Oceanogr. Methods 22: 399-415.

Hu, Y-Y., Samarasinghe, N., Finkel, Z.V. (2024) Measurement of biogenic silica from plankton V.3.  Protocols.io.  dx.doi.org/10.17504/protocols.io.8epv5jjzjl1b/v3

Janovicek, K., Wang, H., McDonald, I., Rosser, B., Lauzon, J., Sulik, J., Susko, E., Nasielski, J. (2024) Effect of soil sample handling and storage on inorganic nitrogen determination: Implications for the presidedress nitrate test.  Soil Sci. Soc. of America J. 88: 1438–1448.

Kess, T. et al. [incl. C. Whidden] (2024) Variable parallelism in the genomic basis of age at maturity across spatial scales in Atlantic Salmon. Ecol. Evol. 4: e11068.

Kmochová, T. et al. [incl. D. Gaston] (2024) Autosomal dominant ApoA4 mutations present as tubulointerstitial kidney disease with medullary amyloidosis. Kidney Int. 105: 799-811.

Koepper, S., Clark, K.F., McClure, J.T., Revie, C.W., Stryhn, H., Thakur, K.K. (2024) Differences in diversity and community composition of the shell microbiome of apparently healthy lobsters Homarus americanus across Atlantic Canada.  Frontiers Microbiol. 15: 1320812.

MacNeil, L., Costa, M., LaRoche, J. (2024) Glimpsing the 2020 spring bloom in the Strait of Georgia (Canada) with autonomous ferry-based sensors.  Marine Ecol. Progr. Series 736: 181-187.

Markowski, E. & Susko, E. (2024) Performance of topology tests under extreme selection bias. Mol. Biol. Evol. 41: msad280.

More, K., Kaur, H., Simpson, A.G.B., Spiegel, F.W., Dacks, J.B. (2024) Contractile vacuoles; a rapidly expanding (and occasionally diminishing) understanding. Eur. J. Protistology 94: 126078.

Northrup, V., Perez, L. J., Edgett, B. A., Karakach, T., Simpson, J.A., Brunt, K.R. (2024) Intron retention is a mechanism of erythropoietin regulation in brain cell models. Gene 898: 148099.

Papale, F. and Doolittle, W.F. (2024) Towards a more general theory of evolution by natural selection: a manifesto.  Philosophy, Theory, and Practice in Biology 16: 2.

Parsons, B.D., Medina-Luna, D., Scur, M., Pinelli, M., Gamage, G.S., Chilvers, R.A., Hamon, Y., Ahmed, I.H.I., Savary, S., Makrigiannis, A.P., Braverman, N.E., Rodriguez-Alcazar, J.F., Latz, E., Karakach, T.K., Di Cara, F. (2024) Peroxisome deficiency underlies failures in hepatic immune cell development and antigen presentation in a severe Zellweger disease model. Cell Reports 43: 113744.

Prasad, M.C.B., Milton, A.A.P., Menon, V.K., Srinivas, K., Bhargavi, D., Das, S., Ghatak, S., Vineesha, S.L., Sunil, B., Latha, C., Priya, P.M., Thomas, N. (2024) Development of a novel visual assay for ultrasensitive detection of Listeria monocytogenes in milk and chicken meat harnessing helix loop-mediated isothermal amplification (HAMP). Food Control 155: 110081.

Redden, L.D., Iaboni, D.S.M., van der Ende, S., Nightingale, M., Gaston, D., McMaster, D.R., Robitaille, J.M., Gupta, R.R. (2024) Multimodal imaging of white preretinal lesions in atypical familial exudative vitreoretinopathy: Case report and literature review.  Amer. J. Ophthalmol. Case Reports 34: 102051.

Rithidech, K.N., Peanlikhit, T., Honikel, L., Li, J., Liu, J., Karakach, T., Zimmerman, T., Welsh, J. (2024) Consumption of apigenin prevents radiation-induced gut dysbiosis in male C57BL/6J mice exposed to silicon ions. Radiation Res.201: 317-329.

Roberts, M.E. et al. [incl. E.M. Bertrand] (2024) Rubisco in high Arctic tidewater glacier-marine systems: A new window into phytoplankton dynamics.  Limnol. Oceanogr. 69: 802-817.

Romanelli, E., Cisternas-Novoa, C., Stevens-Green, R., LaRoche, J., Siegel, D., Carlson, C.A., Passow, U. (2024) Microbial activity on suspended and sinking particles during a Phaeocystis bloom in the Labrador Sea. In 2024 Ocean Sciences Meeting. AGU.

Rose, S., Robicheau, B.M., Tolman, J., Batista, D.F., Rowland, E., Desai, D., Ratten, J., Kantor, E.J., Bertrand, E.M. and LaRoche, J. (2024) Nitrogen-fixation in the Widely Distributed Model Marine γ-proteobacterial Diazotroph Candidatus Thalassolituus haligoni. In 2024 Ocean Sciences Meeting, AGU.

Schvarcz, C.R. et al. [incl. J.M. Archibald] (2024) The genome sequences of the marine diatom Epithemia pelagicastrain UHM3201 and its nitrogen-fixing, endosymbiotic cyanobacterium. Wellcome Open Res. 9: 232.

Sigall-Boneh, R., Organ, S., Yanai, H., Maharshak, N., Dotan, I., Abramas, L., Wine, E., Widesma, N.,  Gu, H., Bielawski, J., Dunn, K., Van Limbergen, J.* (2024) Microbiome composition determines sustained remission after Crohn’s Disease Exclusion Diet with or without partial enteral nutrition in adults with mild-moderate Crohn’s disease.  J. Crohns & Colitis 18: I2134.

Stevens-Green, R., Romanelli, E., Cisternas-Novoa, C., Pollara, S., Jabre, L., Passow, U., Bertrand, E.M. and LaRoche, J. (2024) Exploring the Microbial Communities Involved in the Biological Carbon Pump Throughout the Decline of a Large Phaeocystis pouchetii bloom in the Labrador Sea. In 2024 Ocean Sciences Meeting. AGU.

Suzuki-Tellier, S., Kiørboe, T. & Simpson, A.G.B. (2024) The function of the feeding groove of ‘typical excavate’ flagellates. J. Eukaryotic Microbiol. 71: e13016.

Suzuki-Tellier, S., Miano, F., Asadzadeh, S.S., Simpson, A.G.B. & Kiørboe, T. (2024) Foraging mechanisms in excavate flagellates shed new light on the functional ecology of early eukaryotes. PNAS 121: e2317264121.

Tolman, J., Desai, D., LaRoche, J. (2024) Rapid quantitative assessment of temporal and spatial variation in key functional genes of the microbial nitrogen cycle across multiple marine environments using the NanoString nCounter.  Limnol. Oceanogr. Methods 22: 103-117.

Vahedi, S.M., Ardestani, S., Banabazi, M.H., Clark, K.F. (2024) Strong selection signatures for Aleutian disease tolerance acting on novel candidate genes linked to immune and cellular responses in American mink (Neogale vison). Sci. Rep. 14: 1035. 

van der Ende, S., Robitaille, J., McMaster, C., Gaston, D., Nightingale, M., Wallace, K. (2024) P674: Gene variant spectrum in probands with familial exudative vitreoretinopathy. Genetics Med. Open 2(1): 101578.

Wallace, D. et al. [incl. J. LaRoche] (2024) Use of an urban fjord as a living laboratory for understanding impacts of hypoxia on nitrous oxide production and iodine cycling, and for testing of mitigation strategies.  EGU General Assembly, Apr. 2024, EGU24-20248.

Weston, E.J., Eglit, Y., Simpson, A.G. (2024) Kaonashia insperata gen. et sp. nov., a eukaryotrophic flagellate, represents a novel major lineage of heterotrophic stramenopiles. J. Eukaryot. Microbiol. 71: e13003.

Zhang, W., Kenney, T., Ho, L.S.T. (2024) Evolutionary shift detection with ensemble variable selection. BMC Ecol. Evol. 24: 11.

Ahmed, O.Y., Rossi, M., Gagie, T., Boucher, C., Langmead, B. (2023) SPUMONI 2: improved classification using a pangenome index of minimizer digests. Genome Biol. 24: 122.

Alcock, B.P. et al. [incl. Maguire, F. and Beiko, R.G.] (2023) CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51: D690-D699.

Ayyagari, D., Morris, C., Barnes, J., Whidden, C. (2023) Toward low-cost automated monitoring of life below water with deep learning.  Env. Data Sci. 2: e13.

Behnke, J., Cai, Y., Gu, H., LaRoche, J. (2023) Short-term response to iron resupply in an iron-limited open ocean diatom reveals rapid decay of iron-responsive transcripts. PLoS ONE 18: e0280827.

Biswas, D., De Silva, A., Mercer, A., Sarkar, S., Kienesberger, P., Langille, M., Rupasinghe, VHP., Pulinilkunnil, T. (2023) Supplementation of cyanidin-3-0-B-glucoside-rich haskap berry extract atatenuates hepatic lipid dysregulation in diet-induced obese mice. J. Funct. Foods 108: 105635.

Bojko, J., Behringer, D.C., Bateman, K.S., Stentiford, G.D., Clark, K.F. (2023) Pseudohepatospora borealis n. gen. n. sp. (Microsporidia: Enterocytozoonida): A microsporidian pathogen of the Jonah crab (Cancer borealis).  J. Invertebr. Pathol. 197: 107886.

Boutagayout, A., Belmalha, S., Nassiri, L., El Alami, N., Jiang, Y., Lahlali, R., Bouiamrine, E.H. (2023) Weed competion, land equivalent ratio and yield potential of faba bean (Vicia faba L.)-cereals (Triticum aestivum L. and/or Avena sativa L.) intercropping under low-input conditions in Mednes region, Morocco. Vegetos (Springer): 1-14.

Cai, Y., Gu, H., Kenney, T. (2023) Rank selection for non-negative matrix factorization. Statistics in Med. 42: 5676–5693.

Carnicer, O., Hu, Y.Y., Ebenezer, V., Irwin, A.J., Finkel, Z.V. (2023) Genomic architecture constrains macromolecular allocation in dinoflagellates. Protist 174: 125992.

Chan, K. et al. [incl. F. Maguire] (2023) Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors. Heliyon 9(1): e12744.

Collier, J.L. et al. [incl. Archibald, J.M.] (2023) The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Curr. Biol. 33: 5199-5207.

Colombo, M., LaRoche, J., Desai, D., Li, J., Maldonado, M.T. (2023) Control of particular manganese cycling in halocline Arctic Ocean waters by putative Mn-oxidizing bacterial dynamics.  Limnol. Oceanogr. 68: 2070-2087.

Cozzi, D., Rossi, M., Rubinacci, S., Gagie, T., Köppl, D., Boucher, C., Bonizzoni, P. (2023) μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data. Bioinformatics 39: btad552.

de Bernardo, G., Gagie, T., Ladra, S., Navarro, G., Seco, D. (2023) Faster compressed quadtrees.  J.  Computer Syst. Sci. 131: 86-104.

Delgado, ML, Manosalva A., Urbina, MA, Dalziel, AC, Habit, E., Link, O., Ruzzante, DE (2023) Does the loss of diadromy imply the loss of salinity tolerance? A gene expression study with replicate non-diadromous populations of Galaxias maculatus. Mol. Ecol. 32: 2219–2233.

Dou J., Wang Z., Li L., Lu Q., Ling X., Jin X., Cheng Z., Zhang T., Shao H., Zhai X., Luo Q. (2023) Multiplex quantitative polymerase chain reaction for rapid differential detection of subgroup A, B, J and K avian leukosis viruses. Viruses 15:1789.

Douglas, GM, Kim S., Langille MGI, Shapiro BJ (2023) Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics 39: btac809.

Ebenezer, V., Y Hu, O Carnicer, AJ Irwin, MJ Follows, ZV Finkel (2023) Elemental and macromolecular composition of the marine Chloropicophyceae, a major group of oceanic photosynthetic picoeukaryotes. Limnology & Oceanography 67: 540-551.

Forrestall K, Pringle ES, Sands D, Duguay BA, Farewell B, Woldemariam T, Falzarano D, Pottie I, McCormick C, Darvesh S. (2023) A phenothiazine urea derivative broadly inhibits coronavirus replication via viral protease inhibition. Antiviral Research 220: 105758.

Gagie, T., Saeidi, M., Sapucaia, A. (2023) Ruler wrapping. Int. J. Comput. Geometry Applic. 33: 3–12.

Gallot-Lavallée, L., Jerlström-Hultqvist, J., Zegarra-Vidarte, P., Salas-Leiva, DE, Stairs, CW, Čepička, I., Roger, AJ, Archibald, JM. (2023) Massive intein content in Anaeramoeba reveals aspects of intein mobility in eukaryotes.Proc. Natl. Acad. Sci. USA 120: e2306381120.

Getz, L.J., Brown, J.M., Sobot, L., Chow, A., Mahendrarajah, J., Thomas, N.A. (2023) Attenuation of a DNA cruciform by a conserved regulator directs T3SS1 mediated virulence in Vibrio parahaemolyticus. Nucleic Acids Res. 51: 6156–6171.

Gigeroff, A.S., Eglit, Y., Simpson, A.G.B. (2023) Characterisation and cultivation of new lineages of Colponemids, a critical assemblage for inferring alveolate evolution. Protist 174: 125949.

Gill, I.S. et al. [incl. Gaston, D.] (2023) The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information. Microbial Genomics 9: 000908.

González Morales, N., Marescal, O., Szikora, S., Katzemich, A., Correia-Mesquita, T., Bíró, P., Erdelyi, M., Mihály, J., Schöck, F. (2023) The oxoglutarate dehydrogenase complex is involved in myofibril growth and Z-disc assembly in Drosophila. J. Cell Sci. 136:  jcs260717.

Grandy, S., Scur, M., Dolan, K., Nickerson, R., Cheng, Z. (2023) Using model systems to unravel host-Pseudomonas aeruginosa interactions. Env. Microbiol. 25: 1765–1784.

Hall, M.H., Wellappuli, N.C., Huang, R.C., Wu, K., Lam, D.K., Glogauer, M., Beiko, R.G., Senadheera, D.B. (2023) Suspension of oral hygiene practices highlights key bacterial shifts in saliva, tongue, and tooth plaque during gingival inflammation and resolution. ISME Comm. 3: 51.

Hall, S., Méthé, D., Stewart-Clark, S., Clark, F. (2023) Size and site specific transcriptomic responses of blue mussel (Mytilus edulis) to acute hypoxia. Marine Genomics 71: 101060.

Hansen, L.G., Larsen, L.E., Rasmussen, T.B., Miar, Y., Lassuniére, R., Jørgensen, C.S., Ryt-Hansen, P. (2023) Investigation of the SARS-CoV-2 post-vaccination antibody response in Canadian farmed mink. Vaccine 41: 7387–7394.

Hayes, M.G., Langille, M.G.I., Gu, H. (2023) Cross-study analyses of microbial abundance using generalized common factor methods. BMC Bioinformatics 24: 380.

Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., Worden, A.Z. (2023) Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias. Mol. Biol. Evol. 40: msad251.

Hendricks, A., Mackie, CM, Luy, E., Sonnichsen, C., Smith, J., Grundke, I., Tavasoli, M., Furlong, A., Beiko, RG, LaRoche, J., Sieben V. (2023) Compact and automated eDNA sampler for in situ monitoring of marine environments. Sci. Rep. 13: 5210.

Higuera, A., Salas-Leiva, D.E., Curtis, B.A., Patiño, L.H., Zhao, D., Jerlström-Hultqvist, J, Dlutek, M., Muñoz, M., Roger, A.J., Ramírez, J.D. (2023) Draft genomes of Blastocystis subtypes from human samples of Colombia. Parasites & Vectors 16: 52.

Hu, G., Do, D.N., Manafiazar, G., Kelvin, A.A., Sargolzaei, M., Plastow, G., Wang, Z., Miar, Y. (2023) Population genomics of American mink using genotype data. Frontiers Genet. 14: 1221683.

Hu, Y.Y. and Finkel, Z.V. (2023) Estimate phospholipids from microalgae.  Protocols.io.  https://dx.doi.org/10.17504/protocols.io.q26g74r19gwz/v2

Jiang, Y. et al. (2023) The coordinated regulation of early meiotic stages is dominated by non-coding RNAs and stage-specific transcription in wheat. Plant J. 114: 209–224.

Jones, C., Meynell, L., Neto, C., Susko, E. and Bielawski, J.P. (2023) The role of the ecological scaffold in the origin and maintenance of whole-group trait altruism in microbial populations. BMC Ecol. Evol. 23:11.

Koepper, S., Kelley, S., Thakur, K.K. and Clark, K.F. (2023) Interspecies and spatial differences in the shell microbiome of Atlantic rock crab Cancer irrotatus and European green crab Carcinus maenas from Atlantic Canada. Front. Mar. Sci. 10: 1152544.

Koepper, S., Fraser, K.F., McClure, J.T., Revie, C.W., Stryhn, H., Thakur, K.K. (2023) Long-read sequencing reveals the shell microbiome of apparently healthy American lobsters Homarus americanus from Atlantic Canada.  Front. Microbiol. 14: 1245818.

Kotwa, J.D. et al. [incl. F. Maguire] (2023) Genomic and transcriptomic characterization of Delta SARS-CoV-2 infection in free-ranging white-tailed deer (Odocoileus virginianus). Iscience 26: 108319.

Lampe, R.H., Coale, T.H., Forsch, K.O., Jabre, L.J., Kekuewa, S., Bertrand, E.M., Horák, A., Oborník, M., Rabines, A.J., Rowland, E., Zheng, H., Andersson, A.J., Barbeau, K.A., Allen, A.E. (2023) Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. Nature Comm. 14: 7215.

Li, Z., Zhang, Y., Li, W., Irwin, A.J., Finkel, Z.V. (2023) Common environmental stress responses in a model marine diatom. New Phytol. 240: 272-284.

Liu, C., Kenny, T., Beiko, R.G., Gu, H. (2023) The community coevolution model with application to the study of evolutionary relationships between genes based on phylogenetic profiles. Syst. Biol. 72: 559-574.

Lloyd, A.W., Percival, D., Langille, MGI, Yurgel, S.N.* (2023) Changes to soil microbiome resulting from synergetic effects of fungistatic compounds Pyrimethanil and Fluopyram in lowbush blueberry agriculture with nine fungicide products tested. Microorganisms 11: 410.

Lyu, X., Gagie, T., He, M., Nekrich, Y., Zeh, N. (2023) Sum-of-local-effects data structures for separable graphs.  Int. Comput. Combinatorics Conf., Springer, 195-206.

MacDonald, T., Dunn, KA, MacDonald, J., Langille, MGI, Van Limbergen, JE*, Bielawski, JP, Kulkarni, K. (2023) The gastrointestinal antibiotic resistome in pediatric leukemia and lymphoma patients. Front. Cell. Infect. Microbiol. 13: 1102501.

Magpali, L. and Bielawski, J.P. (2023) Why are whales big? Genes behind ocean giants.  Trends Genet. 39: 436-438.

Mathavarajah, S., Vergunst, K.L., Habib, E.B., Williams, S.K., He, R., Maliougina, M., Park, M., Salsman, J., Roy, S., Braasch, I., Roger, A.J., Langelaan, D.N., Dellaire, G. (2023) PML and PML-like exonucleases restrict retrotransposons in jawed vertebrates. Nucleic Acids Res. 51: 3185-3204.

McCormick, N.E., Earle, M., Kent, A., Ha, C., Hakes, L., Anderson, L., Stoddart, A.K., Langille, M.G.I., Gagnon, G.A. (2023) Betaproteobacteria are a key component of surface water biofilters that maintain sustained manganese removal in response to fluctuations in influent water temperature. Water Res. 244: 120515.

McCormick, NE, Earle, M, Stoddart, AK, Langille, MGI, Gagnon, GA (2023) Understanding the impact of different source water types on the biofilm characteristics and microbial communities of manganese removing biofilters. Environ. Sci: Water Res Technol. 9: 48-61.

McCracken, G.R., Gaston, D., Pettipas, J., Loder, A., Majer, A., Grudeski, E., Labbé, G., Joy, B.K., Patriquin, G., LeBlanc, J.J. (2023) Neglected SARS-CoV-2 variants and potential concerns for molecular diagnostics: a framework for nucleic acid amplification test target site quality assurance. Microbiol. Spectrum 11: e0076123.

McGinty, N., AJ Irwin, ZV Finkel, S Dutkiewicz (2023) Using ecological partitions to assess zooplankton biogeography and seasonality. Frontiers 10: 989770. 

Muñoz-Gómez, SA, Cadena LR, Gardiner AT, Leger MM, Sheikh S, Connell LB, Bilý T, Kopejtka K, Beatty JT, Koblížek M, Roger AJ, Slamovits CH, Lukeš J, Hashimi H. (2023) Intracytoplasmic-membrane development in alphaproteobacteria involves the homolog of the mitochondrial crista-developing protein Mic60. Curr. Biol. 33: 1099-1111.

Mutshinda, CM, A Mishra, ZV Finkel, AJ Irwin (2023) Density regulation amplifies environmentally induced population fluctuations. Peer J. 11: e14701.

Nearing, JT, DeClercq V, Langille MGI (2023) Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer. NPJ Biofilms Microbiomes 9:23.

Neto, C.A. and Doolittle, W.F. (2023) A chemostat model for evolution by persistence, clade selection and its explanatory autonomy. Philos Sci. 90: 21-38.

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Nguyen, L., Taeruma, S.J., Jasso-Selles, D.E., Slamovits, C.H., Silberman, J.D., Gile, G.H. (2023) True molecular phylogenetic position of the cockroach gut commensal Lophomonas blattarum (Lophomonadida, Parabasalia). J. Eukaryot. Microbiol. 70: e12988.

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Robicheau, B.M., Tolman, J., Desai, D., LaRoche, J. (2023) Microevolutionary patterns in ecotypes of the symbiotic cyanobacterium UCYN-A revealed from a Northwest Atlantic coastal time series. Science Advances 9: eadh9768.

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Thapa, P.C., Do, D.N., Manafiazar, G., Miar, Y. (2023) Coat color inheritance in American mink. BMC Genomics 24: 234.

Thilakarathna, WPDW, Langille, MGI, Rupasinghe, VHP (2023) Hepatotoxicity of polymeric proanthocyanidins is caused by translocation of bacterial lipopolysaccharides through impaired gut epithelium. Toxicology Lett. 379: 35-47.

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Wright, RJ, Pewarchuk ME, Marshall EA, Murray B, Rosin MP, Laronde DM, Zhang L, Lam WL, Langille MGI, Rock LD (2023) Exploring the microbiome of oral epithelial dysplasia as a predictor of malignant progression. BMC Oral Health 23: 206.

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Zadjelovic, V., Wright, R.J., Borsetto, C., Quartey, J., Cairns, T.N., Langille, M.G.I., Wellington, E. M.H., Christie-Oleza, J.A. (2023) Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere. Microbiome 11: 225.

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Zamiara, P., Elsharawi, I., Gaston, D., DeCoste, R.C., Malone, E., Bullock, M.J.., Castonguay, MC., Carter, M.D. (2023) Identification of identical BAP1 mutations in a patient’s peritoneal mesothelioma and mucosal melanoma: A precision medicine case study.  Human Pathology Reports 32: 300705.

Zhabokritsky, A., Mubareka, S., Kozak, R.A., Maguire, F., Yip, L., Yip, P., Powis, J. (2023) Persistent infection with severe acute respiratory coronavirus virus 2 (SARS-CoV-2) in a patient with untreated human immunodeficiency virus (HIV). Infect. Control Hosp. Epidem. 44: 350-351.

Zhang, W., Liang, G., Cheng, Z., Guo, Y., Jiang, B., Liu, T., Liao, W., Lu, Q., Wen, G., Zhang, T., Luo, Q. (2023) Flos populi (Male Inflorescence of Populus tomentosa Carrière) Aqueous extract suppresses Salmonella pulloruminfection by affecting T3SS-1. Pathogens 12: 790.

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